Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs2077026 chr11:64649767 T/C 3.15E-5 500 6.6 22.83 21.65 KM Plot
HNSC rs2091798 chr2:99823931 T/C 4.47E-8 514 6.83 19.23 22.42 KM Plot
HNSC rs2117114 chr1:226571619 A/G 4.1E-5 515 21.47 23.77 12.63 KM Plot
HNSC rs2122597 chr4:140297042 C/T 1.66E-5 508 20.63 26.63 18.67 KM Plot
HNSC rs2218803 chr3:161047973 T/G 1.72E-5 503 24.68 23.98 17.53 KM Plot
HNSC rs2226009 chr1:248526181 T/G 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs2245516 chr5:54559846 A/G 3.68E-5 505 12.37 23.27 21.65 KM Plot
HNSC rs2298370 chr21:48080477 C/T 7.01E-9 503 21.53 20.53 2.73 KM Plot
HNSC rs2309615 chr2:99898998 T/C 9.29E-7 512 7 20.77 22.2 KM Plot
HNSC rs2309616 chr2:99879962 A/C 9.26E-7 513 7 20.48 22.2 KM Plot
HNSC rs231627 chr5:54560289 G/A 3.15E-5 502 12.37 23.17 21.65 KM Plot
HNSC rs2340311 chr13:20363986 A/G 4.43E-5 514 26.3 16.23 22.82 KM Plot
HNSC rs2406872 chr12:42860752 C/T 1.35E-5 510 22.1 22.58 16.87 KM Plot
HNSC rs2442528 chr8:6423992 G/A 4.29E-5 500 15 23.17 22.23 KM Plot
HNSC rs2597855 chr4:140359958 T/C 9.75E-6 492 18.2 26.83 20 KM Plot